Index

A

ADD (pisa.utils.callable.OPS attribute) add_aeff_weight() (pisa.stages.data.sqlite_loader.sqlite_loader method) add_container() (pisa.core.container.ContainerSet method) add_covariance() (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.param.ParamSet method) (pisa.core.pipeline.Pipeline method) add_fluxes_to_file() (in module pisa.scripts.add_flux_to_events_file) add_indices (class in pisa.stages.utils.add_indices) add_leg() (pisa.utils.plotter.Plotter method) add_opp() (pisa.utils.callable.Funct method) add_reco() (pisa.stages.data.sqlite_loader.sqlite_loader method) add_section() (pisa.utils.config_parser.PISAConfigParser method) add_stamp() (pisa.utils.plotter.Plotter method) add_truth() (pisa.stages.data.sqlite_loader.sqlite_loader method) addPrior() (pisa.utils.fisher_matrix.FisherMatrix method) adhoc_sys (class in pisa.stages.utils.adhoc_sys) aeff (class in pisa.stages.aeff.aeff) all_keys (pisa.core.container.Container property) all_keys_incl_aux_data (pisa.core.container.Container property) ALL_METRICS (in module pisa.utils.stats) allclose() (pisa.core.map.Map method) (pisa.core.map.MapSet method) (pisa.utils.flavInt.FlavIntData method) (pisa.utils.flavInt.FlavIntDataGroup method) ALLCLOSE_KW (in module pisa.utils.comparisons) alpha1 (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) alpha2 (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) Analysis (class in pisa.analysis.analysis) ANTIPART_CODE (pisa.utils.flavInt.NuFlav attribute) antiparticle (pisa.utils.flavInt.NuFlav property) (pisa.utils.flavInt.NuFlavInt property) antiparticles (pisa.utils.flavInt.NuFlavIntGroup property) antipion_production() (pisa.stages.flux.mceq_barr.mceq_barr method) (pisa.stages.flux.mceq_barr_red.mceq_barr_red method) apply() (pisa.core.stage.Stage method) (pisa.stages.utils.kde.kde method) APPLY_ALL_SECTION_NAME (in module pisa.scripts.fit_hypersurfaces) apply_cut() (pisa.core.events_pi.EventsPi method) apply_cuts() (pisa.utils.data_proc_params.DataProcParams method) apply_cuts_to_events() (pisa.stages.data.simple_data_loader.simple_data_loader method) apply_floor() (in module pisa.stages.utils.set_variance) apply_function() (pisa.core.stage.Stage method) (pisa.stages.absorption.earth_absorption.earth_absorption method) (pisa.stages.aeff.aeff.aeff method) (pisa.stages.aeff.param.param method) (pisa.stages.aeff.weight.weight method) (pisa.stages.aeff.weight_hnl.weight_hnl method) (pisa.stages.background.atm_muons.atm_muons method) (pisa.stages.cont_sys.snowstorm_hist.snowstorm_hist method) (pisa.stages.data.csv_icc_hist.csv_icc_hist method) (pisa.stages.data.csv_loader.csv_loader method) (pisa.stages.data.grid.grid method) (pisa.stages.data.meows_loader.meows_loader method) (pisa.stages.data.simple_data_loader.simple_data_loader method) (pisa.stages.data.simple_signal.simple_signal method) (pisa.stages.data.sqlite_loader.sqlite_loader method) (pisa.stages.data.toy_event_generator.toy_event_generator method) (pisa.stages.discr_sys.csv_hypersurfaces.csv_hypersurfaces method) (pisa.stages.discr_sys.hypersurfaces.hypersurfaces method) (pisa.stages.discr_sys.ultrasurfaces.ultrasurfaces method) (pisa.stages.flux.astrophysical.astrophysical method) (pisa.stages.likelihood.generalized_llh_params.generalized_llh_params method) (pisa.stages.osc.decoherence.decoherence method) (pisa.stages.osc.external.external method) (pisa.stages.osc.globes.globes method) (pisa.stages.osc.prob3.prob3 method) (pisa.stages.osc.two_nu_osc.two_nu_osc method) (pisa.stages.utils.adhoc_sys.adhoc_sys method) (pisa.stages.utils.bootstrap.bootstrap method) (pisa.stages.utils.fix_error.fix_error method) (pisa.stages.utils.hist.hist method) (pisa.stages.utils.kde.kde method) (pisa.stages.utils.kfold.kfold method) (pisa.stages.utils.set_variance.set_variance method) (pisa.stages.xsec.correct_charm_y.correct_charm_y method) (pisa.stages.xsec.dis_sys.dis_sys method) (pisa.stages.xsec.genie_sys.genie_sys method) (pisa.stages.xsec.nutau_xsec.nutau_xsec method)

apply_genie_sys() (in module pisa.stages.xsec.genie_sys) apply_mode (pisa.core.stage.Stage property) apply_ratio_scale() (in module pisa.stages.flux.barr_simple) apply_sys_kernel() (in module pisa.stages.flux.barr_simple) apply_sys_loop() (in module pisa.stages.flux.astrophysical) (in module pisa.stages.flux.mceq_barr) (in module pisa.stages.flux.mceq_barr_red) apply_to_maps() (pisa.core.map.MapSet method) applyCut() (pisa.core.events.Data method) (pisa.core.events.Events method) are_discrete (pisa.core.param.ParamSet property) are_fixed (pisa.core.param.ParamSet property) arg_str_seq_none() (in module pisa.utils.format) arg_to_tuple() (in module pisa.utils.format) array() (in module pisa) array_representations (pisa.core.container.Container attribute) array_to_binned() (pisa.core.container.Container method) ary2str() (in module pisa.stages.osc.prob3numba.numba_osc_tests) as_integer_ratio() (pisa.float32 method) (pisa.float64 method) assemble_interpolated_fits() (in module pisa.utils.hypersurface.hyper_interpolator) assert_apply_modes_consistency() (pisa.core.pipeline.Pipeline method) assert_array_fits() (pisa.core.binning.MultiDimBinning method) assert_compat() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.map.Map method) assert_exclusive_varbinning() (pisa.core.pipeline.Pipeline method) assert_varbinning_compat() (pisa.core.pipeline.Pipeline method) assign() (in module pisa.utils.vectorizer) astrophysical (class in pisa.stages.flux.astrophysical) atm_muons (class in pisa.stages.background.atm_muons) auto_populate_test_case() (in module pisa.stages.osc.prob3numba.numba_osc_tests) auto_translate() (pisa.core.container.Container method)

B

bar_code (pisa.utils.flavInt.NuFlav property) barlow_llh() (in module pisa.utils.stats) (pisa.core.map.Map method) barlowLLH() (in module pisa.utils.likelihood_functions) barnobarfract() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) barr_simple (class in pisa.stages.flux.barr_simple) bars_and_stars_iterator() (in module pisa.utils.llh_defs.poisson) BarSep (class in pisa.utils.flavInt) basename (pisa.core.binning.OneDimBinning property) basename() (in module pisa.core.binning) basename_binning (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) basenames (pisa.core.binning.MultiDimBinning property) BasicAnalysis (class in pisa.analysis.analysis) bestfit_plots (pisa.utils.barlow.Likelihoods attribute) bin_edges (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) bin_names (pisa.core.binning.OneDimBinning property)

BIN_PREFIX_TO_POWER_OF_1024 (in module pisa.utils.format) bin_volumes() (pisa.core.binning.MultiDimBinning method) bin_widths (pisa.core.binning.OneDimBinning property) binned_to_array() (pisa.core.container.Container method) binning (pisa.core.map.Map property) (pisa.utils.hypersurface.hyper_interpolator.HypersurfaceInterpolator property) binnings (pisa.core.binning.VarBinning property) bit_count() (pisa.int16 method) (pisa.int32 method) (pisa.int64 method) (pisa.int8 method) (pisa.uint16 method) (pisa.uint32 method) (pisa.uint64 method) (pisa.uint8 method) blindness (pisa.analysis.analysis.BasicAnalysis attribute) bootstrap (class in pisa.stages.utils.bootstrap) broadcast() (pisa.core.binning.MultiDimBinning method) broadcaster() (pisa.core.binning.MultiDimBinning method)

C

c_generalized_pg_mixture() (in module pisa.utils.llh_defs.poisson_gamma_mixtures) c_generalized_pg_mixture_marginalized() (in module pisa.utils.llh_defs.poisson_gamma_mixtures) c_generalized_pg_mixture_marginalized_combined() (in module pisa.utils.llh_defs.poisson_gamma_mixtures) c_multi_pgg() (in module pisa.utils.llh_defs.poisson_gamma_mixtures) c_single_pgg() (in module pisa.utils.llh_defs.poisson_gamma_mixtures) CACHE_DIR (in module pisa) calc_decoherence_probs() (in module pisa.stages.osc.decoherence) calc_mode (pisa.core.stage.Stage property) calc_pg() (in module pisa.utils.llh_defs.poisson) calc_prob_e_mu() (pisa.stages.osc.globes.globes method) calc_prob_nonsterile() (pisa.stages.osc.globes.globes method) calc_probs() (in module pisa.stages.osc.two_nu_osc) (pisa.stages.osc.decoherence.decoherence method) (pisa.stages.osc.prob3.prob3 method) calcLayers() (pisa.stages.osc.layers.Layers method) calcPathLength() (pisa.stages.osc.layers.Layers method) calculate_2d_flux_weights() (in module pisa.utils.flux_weights) calculate_3d_flux_weights() (in module pisa.utils.flux_weights) calculate_survivalprob() (in module pisa.stages.absorption.earth_absorption) calculate_xsections() (pisa.stages.absorption.earth_absorption.earth_absorption method) calculateCovariance() (pisa.utils.fisher_matrix.FisherMatrix method) callable (pisa.core.param.DerivedParam property) cc (pisa.utils.flavInt.IntType property) (pisa.utils.flavInt.NuFlavInt property) CC_CODE (pisa.utils.flavInt.IntType attribute) cc_flavints (pisa.utils.flavInt.NuFlavIntGroup property) cc_flavs (pisa.utils.flavInt.NuFlavIntGroup property) central_values (pisa.stages.cont_sys.snowstorm_hist.snowstorm_hist attribute) check() (in module pisa.stages.osc.prob3numba.numba_osc_tests) checkConsistency() (pisa.utils.fisher_matrix.FisherMatrix method) chi2() (in module pisa.utils.stats) (pisa.core.map.Map method) (pisa.core.prior.Prior method) CHI2_METRICS (in module pisa.utils.stats) chi2_per_map() (pisa.core.map.MapSet method) chi2_total() (pisa.core.map.MapSet method) clear() (pisa.OrderedDict method) clear_matrix() (in module pisa.utils.numba_tools) CMSQ_TO_MSQ (in module pisa.scripts.make_events_file) code (pisa.utils.flavInt.IntType property) (pisa.utils.flavInt.NuFlav property) col() (pisa.utils.hdfchain.HDFTableProxy method) col_iter() (pisa.utils.hdfchain.HDFTableProxy method) collate_with_names() (pisa.core.map.MapSet method) combine_re() (pisa.core.map.MapSet method) COMBINE_REGEX_OPTION (in module pisa.scripts.fit_hypersurfaces) combine_wildcard() (pisa.core.map.MapSet method) CombinedSpline (class in pisa.utils.spline) compare() (in module pisa.scripts.compare) (pisa.core.map.Map method) (pisa.core.map.MapSet method) compare_numeric() (in module pisa.stages.osc.prob3numba.numba_osc_tests) complex128 (class in pisa) complex256 (in module pisa) complex64 (class in pisa) compute() (pisa.core.stage.Stage method) compute_function() (pisa.core.stage.Stage method) (pisa.stages.absorption.earth_absorption.earth_absorption method) (pisa.stages.cont_sys.snowstorm_hist.snowstorm_hist method) (pisa.stages.discr_sys.csv_hypersurfaces.csv_hypersurfaces method) (pisa.stages.discr_sys.hypersurfaces.hypersurfaces method) (pisa.stages.discr_sys.ultrasurfaces.ultrasurfaces method) (pisa.stages.flux.astrophysical.astrophysical method) (pisa.stages.flux.barr_simple.barr_simple method) (pisa.stages.flux.daemon_flux.daemon_flux method) (pisa.stages.flux.hillasg.hillasg method) (pisa.stages.flux.honda_ip.honda_ip method) (pisa.stages.flux.mceq_barr.mceq_barr method) (pisa.stages.flux.mceq_barr_red.mceq_barr_red method) (pisa.stages.osc.decoherence.decoherence method) (pisa.stages.osc.external.external method) (pisa.stages.osc.globes.globes method) (pisa.stages.osc.prob3.prob3 method) (pisa.stages.utils.fix_error.fix_error method) (pisa.stages.utils.set_variance.set_variance method) (pisa.stages.xsec.nutau_xsec.nutau_xsec method)

compute_integrated_maps() (pisa.utils.spline.CombinedSpline method) compute_maps() (pisa.utils.spline.CombinedSpline method) computeMinLengthToLayers() (pisa.stages.osc.layers.Layers method) config (pisa.core.pipeline.Pipeline property) conjugate() (in module pisa.utils.numba_tools) conjugate_transpose() (in module pisa.utils.numba_tools) consistency_checks() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) Container (class in pisa.core.container) ContainerSet (class in pisa.core.container) continuous (pisa.core.param.ParamSet property) conv_llh() (in module pisa.utils.stats) (pisa.core.map.Map method) conv_poisson() (in module pisa.utils.stats) coord (pisa.core.binning.MultiDimBinning property) copy() (pisa.OrderedDict method) copy_matrix() (in module pisa.utils.numba_tools) core_density_scale (pisa.stages.osc.scaling_params.Core_scaling_w_constrain property) (pisa.stages.osc.scaling_params.Core_scaling_wo_constrain property) Core_scaling_w_constrain (class in pisa.stages.osc.scaling_params) Core_scaling_wo_constrain (class in pisa.stages.osc.scaling_params) correct_charm_y (class in pisa.stages.xsec.correct_charm_y) correct_chi2() (in module pisa.utils.stats) (pisa.core.map.Map method) COS (pisa.utils.callable.OPS attribute) cos (pisa.utils.callable.TrigOps property) cos() (in module pisa.utils.callable) count (pisa.analysis.analysis.Counter property) Counter (class in pisa.analysis.analysis) create_hypersurfaces() (in module pisa.scripts.fit_hypersurfaces) CrossSections (class in pisa.utils.cross_sections) csv_data_hist (class in pisa.stages.data.csv_data_hist) csv_hypersurfaces (class in pisa.stages.discr_sys.csv_hypersurfaces) csv_icc_hist (class in pisa.stages.data.csv_icc_hist) csv_loader (class in pisa.stages.data.csv_loader) CTYPE (in module pisa) ctype (in module pisa.utils.numba_tools) cuda() (in module pisa.utils.numba_tools) cuda_copy() (in module pisa.utils.numba_tools) current_bin (pisa.utils.barlow.Likelihoods attribute) cut_bool_idx() (pisa.utils.data_proc_params.DataProcParams static method) CX (in module pisa.stages.osc.prob3numba.numba_osc_hostfuncs)

D

daemon_flux (class in pisa.stages.flux.daemon_flux) Data (class in pisa.core.events) data (pisa.core.stage.Stage property) data_eq() (pisa.core.events.Data method) (pisa.core.events.Events method) data_histogram (pisa.utils.barlow.Likelihoods attribute) DataProcParams (class in pisa.utils.data_proc_params) DEBUG (pisa.utils.log.Levels attribute) debug_mode (pisa.core.stage.Stage property) decay_alpha3 (pisa.stages.osc.decay_params.DecayParams attribute) (pisa.stages.osc.decay_params.DecayParams property) decay_matrix (pisa.stages.osc.decay_params.DecayParams attribute) (pisa.stages.osc.decay_params.DecayParams property) DecayParams (class in pisa.stages.osc.decay_params) decoherence (class in pisa.stages.osc.decoherence) DecoherenceParams (class in pisa.stages.osc.decoherence) default() (pisa.utils.jsons.NumpyEncoder method) default_map_tex() (in module pisa.utils.format) default_translation_mode (pisa.core.container.Container attribute) deltacp (pisa.stages.osc.osc_params.OscParams attribute) (pisa.stages.osc.osc_params.OscParams property) deltansi (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) density (pisa.stages.osc.layers.Layers attribute) (pisa.stages.osc.layers.Layers property) density_neutron_weighted (pisa.stages.osc.layers.Layers attribute) (pisa.stages.osc.layers.Layers property) density_scale (pisa.stages.osc.scaling_params.Mass_scaling property) depends_names (pisa.core.param.DerivedParam property) dependson (pisa.core.param.DerivedParam property) DerivedParam (class in pisa.core.param)

Detectors (class in pisa.core.detectors) DetMCSimRunsSettings (class in pisa.utils.mcSimRunSettings) dict_lookup_wildcard() (in module pisa.stages.reco.simple_param) digitize() (pisa.core.events.Data method) dimensionality (pisa.core.param.Param property) dimensions (pisa.core.binning.MultiDimBinning property) dims (pisa.core.binning.MultiDimBinning property) dis_sys (class in pisa.stages.xsec.dis_sys) discrete (pisa.core.param.ParamSet property) distance (pisa.stages.osc.layers.Layers attribute) (pisa.stages.osc.layers.Layers property) distribution_makers (pisa.core.detectors.Detectors property) DistributionMaker (class in pisa.core.distribution_maker) dm_matrix (pisa.stages.osc.osc_params.OscParams attribute) (pisa.stages.osc.osc_params.OscParams property) do_1d_2d_bartol_test() (in module pisa.scripts.test_flux_weights) do_1d_2d_honda_test() (in module pisa.scripts.test_flux_weights) do_1d_3d_honda_test() (in module pisa.scripts.test_flux_weights) do_2d_2d_bartol_test() (in module pisa.scripts.test_flux_weights) do_2d_2d_comparisons() (in module pisa.scripts.test_flux_weights) do_2d_2d_honda_test() (in module pisa.scripts.test_flux_weights) do_2d_3d_honda_test() (in module pisa.scripts.test_flux_weights) domain (pisa.core.binning.OneDimBinning property) domains (pisa.core.binning.MultiDimBinning property) downsample() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.map.Map method) (pisa.core.map.MapSet method) dump() (pisa.utils.plotter.Plotter method) dumps() (in module pisa.utils.jsons)

E

earth_absorption (class in pisa.stages.absorption.earth_absorption) edge_magnitudes (pisa.core.binning.OneDimBinning property) edges_hash (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) empty() (pisa.core.binning.MultiDimBinning method) empty_bin_indices (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) energy_dependent_sigma() (in module pisa.stages.reco.simple_param) engfmt() (in module pisa.utils.format) eps_ee (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_emu (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_etau (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_matrix (pisa.stages.osc.nsi_params.NSIParams attribute) (pisa.stages.osc.nsi_params.StdNSIParams attribute) (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_mumu (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_mutau (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)

eps_prime (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_scale (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) eps_tautau (pisa.stages.osc.nsi_params.StdNSIParams property) (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) EPSILON (in module pisa) EQUALITY_PREC (in module pisa.utils.comparisons) EQUALITY_SIGFIGS (in module pisa.utils.comparisons) ERROR (pisa.utils.log.Levels attribute) error_method (pisa.core.stage.Stage property) evaluate() (pisa.utils.hypersurface.hypersurface.Hypersurface method) (pisa.utils.hypersurface.hypersurface.HypersurfaceParam method) evaluate_flux_map() (in module pisa.stages.flux.daemon_flux) Events (class in pisa.core.events) EventsPi (class in pisa.core.events_pi) execute_func() (in module pisa.stages.osc.prob3numba.numba_osc_tests) expand() (in module pisa.utils.fileio) expected_container_keys (pisa.core.stage.Stage attribute) expected_params (pisa.core.stage.Stage attribute) extCalcLayers() (in module pisa.stages.osc.layers) extend() (pisa.core.param.ParamSet method) external (class in pisa.stages.osc.external) extract_vals() (in module pisa.scripts.make_nufit_theta23_spline_priors)

F

FAST_HASH_FILESIZE_BYTES (in module pisa.utils.hash) FAST_HASH_NDARRAY_ELEMENTS (in module pisa.utils.hash) FAST_HASH_STR_CHARS (in module pisa.utils.hash) fast_pgmix() (in module pisa.utils.llh_defs.poisson) FATAL (pisa.utils.log.Levels attribute) fbwkde() (in module pisa.utils.vbwkde) file_str() (pisa.utils.flavInt.NuFlavIntGroup method) find_files() (in module pisa.utils.fileio) find_index() (in module pisa.core.translation) find_index_unsafe() (in module pisa.core.translation) find_map() (pisa.core.map.MapSet method) find_path() (in module pisa.utils.resources) find_resource() (in module pisa.utils.resources) find_valid_representation() (pisa.core.container.Container method) finite_binning (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) FINT_RE (pisa.utils.flavInt.NuFlavInt attribute) FINT_SSEP (pisa.utils.flavInt.NuFlavInt attribute) FINT_TEXSEP (pisa.utils.flavInt.NuFlavInt attribute) FisherMatrix (class in pisa.utils.fisher_matrix) fit() (pisa.utils.hypersurface.hypersurface.Hypersurface method) fit_coefft_labels (pisa.utils.hypersurface.hypersurface.Hypersurface property) fit_coeffts (pisa.utils.hypersurface.hypersurface.Hypersurface property) fit_hypersurfaces() (in module pisa.utils.hypersurface.hypersurface) fit_hypo() (pisa.analysis.analysis.Analysis method) fit_maps (pisa.utils.hypersurface.hypersurface.Hypersurface property) fit_param_values (pisa.utils.hypersurface.hypersurface.Hypersurface property) fit_recursively() (pisa.analysis.analysis.BasicAnalysis method) FIVE_LAYER_RADII (in module pisa.stages.osc.scaling_params) FIVE_LAYER_RHOS (in module pisa.stages.osc.scaling_params) fix() (pisa.core.param.ParamSet method) fix_error (class in pisa.stages.utils.fix_error) fix_oppo_flux() (in module pisa.core.events_pi) fixed (pisa.core.param.ParamSet property) flav (pisa.utils.flavInt.NuFlavInt property) FLAV_BAR_STR_MAPPING (in module pisa.stages.absorption.earth_absorption) FLAV_RE (pisa.utils.flavInt.NuFlav attribute) (pisa.utils.flavInt.NuFlavIntGroup attribute) flavint_groups (pisa.core.events.Events property) (pisa.utils.flavInt.FlavIntDataGroup property) FLAVINT_RE (pisa.utils.flavInt.NuFlavIntGroup attribute) FlavIntData (class in pisa.utils.flavInt) FlavIntDataGroup (class in pisa.utils.flavInt) flavintGroupsFromString() (in module pisa.utils.flavInt) flavints (pisa.utils.flavInt.FlavIntData property) (pisa.utils.flavInt.NuFlavIntGroup property)

flavints_present (pisa.core.events.Events property) flavs (pisa.utils.flavInt.FlavIntData property) (pisa.utils.flavInt.NuFlavIntGroup property) float32 (class in pisa) float64 (class in pisa) fluctuate() (pisa.core.map.Map method) (pisa.core.map.MapSet method) (pisa.utils.hypersurface.hypersurface.Hypersurface method) fork_servers() (in module pisa.utils.llh_server) format_num() (in module pisa.utils.format) free (pisa.core.param.ParamSet property) from_cfg() (in module pisa.utils.fileio) from_file() (in module pisa.utils.fileio) from_hdf() (in module pisa.utils.hdf) from_json() (in module pisa.utils.jsons) (pisa.core.binning.MultiDimBinning class method) (pisa.core.binning.OneDimBinning class method) (pisa.core.map.Map class method) (pisa.core.map.MapSet class method) (pisa.core.param.Param class method) (pisa.core.param.ParamSet class method) (pisa.utils.callable.Funct class method) (pisa.utils.callable.OPS class method) (pisa.utils.callable.Var class method) from_pickle() (in module pisa.utils.fileio) from_state() (pisa.core.param.DerivedParam class method) (pisa.utils.callable.Funct class method) (pisa.utils.callable.OPS class method) (pisa.utils.callable.Var class method) (pisa.utils.hypersurface.hypersurface.Hypersurface class method) (pisa.utils.hypersurface.hypersurface.HypersurfaceParam class method) fromFile() (pisa.utils.fisher_matrix.FisherMatrix class method) fromkeys() (pisa.OrderedDict class method) fromPaPAFile() (pisa.utils.fisher_matrix.FisherMatrix class method) fronebius_nearest_psd() (in module pisa.utils.matrix) fsort() (in module pisa.utils.fileio) FTYPE (in module pisa) ftype (in module pisa.utils.numba_tools) FTYPE_PREC (in module pisa.utils.comparisons) full() (pisa.core.binning.MultiDimBinning method) full_comparison (pisa.core.map.Map property) full_hash (pisa.core.stage.Stage attribute) Funct (class in pisa.utils.callable) FX (in module pisa.stages.osc.prob3numba.numba_osc_hostfuncs)

G

gaussians() (in module pisa.utils.gaussians) gen_mat_pot_matrix_complex (pisa.stages.osc.prob3.prob3 attribute) GENERAL_SECTION_NAME (in module pisa.scripts.fit_hypersurfaces) generalized_llh_params (class in pisa.stages.likelihood.generalized_llh_params) generalized_pg_mixture_2nd() (in module pisa.utils.llh_defs.poisson) generalized_poisson_llh() (in module pisa.utils.stats) (pisa.core.map.Map method) genie_sys (class in pisa.stages.xsec.genie_sys) get() (pisa.core.param.ParamSelector method) get_bar_ssep() (in module pisa.utils.flavInt) get_corr_factors() (pisa.stages.discr_sys.csv_hypersurfaces.csv_hypersurfaces method) get_data() (pisa.utils.data_proc_params.DataProcParams method) get_energy_range() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) get_fit_coefft() (pisa.utils.hypersurface.hypersurface.HypersurfaceParam method) get_fit_coefft_idx() (pisa.utils.hypersurface.hypersurface.HypersurfaceParam method) get_flavints() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) get_flavs() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) get_hist() (in module pisa.utils.kde_hist) (pisa.core.container.Container method) get_hypersurface() (pisa.utils.hypersurface.hyper_interpolator.HypersurfaceInterpolator method) get_incomplete_job_idx() (in module pisa.utils.hypersurface.hyper_interpolator) get_integrated_map() (pisa.utils.spline.CombinedSpline method) (pisa.utils.spline.Spline method) get_keep_mask() (pisa.core.container.Container method) get_llh() (pisa.utils.barlow.Likelihoods method) get_llh_barlow_bin() (pisa.utils.barlow.Likelihoods method) get_llh_poisson() (pisa.utils.barlow.Likelihoods method) get_map() (pisa.core.container.Container method) (pisa.utils.spline.CombinedSpline method) (pisa.utils.spline.Spline method) get_mapset() (pisa.core.container.ContainerSet method) get_nlopt_inequality_constraint_funcs() (in module pisa.analysis.analysis) get_nominal_mask() (pisa.utils.hypersurface.hypersurface.Hypersurface method) get_num_gen() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) get_on_axis_mask() (pisa.utils.hypersurface.hypersurface.Hypersurface method) get_outputs() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.pipeline.Pipeline method)

get_pid_and_interaction_type() (pisa.stages.data.sqlite_loader.sqlite_loader method) get_plot() (pisa.utils.barlow.Likelihoods method) get_prior_bounds() (in module pisa.core.prior) get_random_state() (in module pisa.utils.random_numbers) get_shared_keys() (pisa.core.container.ContainerSet method) get_single_plots() (pisa.utils.barlow.Likelihoods method) get_spectral_index() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) get_spline() (pisa.utils.spline.CombinedSpline method) get_transition_matrix() (in module pisa.stages.osc.prob3numba.numba_osc_kernels) get_us_grouping_from_container_name() (in module pisa.stages.discr_sys.ultrasurfaces) get_valid_filename() (in module pisa.utils.fileio) get_version() (pisa.utils.cross_sections.CrossSections method) get_xs_ratio_integral() (pisa.utils.cross_sections.CrossSections method) get_xs_ratio_value() (pisa.utils.cross_sections.CrossSections method) get_xs_value() (pisa.utils.cross_sections.CrossSections method) get_xsec() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) get_xsec_version() (pisa.utils.mcSimRunSettings.DetMCSimRunsSettings method) (pisa.utils.mcSimRunSettings.MCSimRunSettings method) getBestFit() (pisa.utils.fisher_matrix.FisherMatrix method) getCorrelation() (pisa.utils.fisher_matrix.FisherMatrix method) getCovariance() (pisa.utils.fisher_matrix.FisherMatrix method) getErrorEllipse() (pisa.utils.fisher_matrix.FisherMatrix method) getLabel() (pisa.utils.fisher_matrix.FisherMatrix method) getNode() (pisa.utils.hdfchain.HDFChain method) getParameterIndex() (pisa.utils.fisher_matrix.FisherMatrix method) getPrior() (pisa.utils.fisher_matrix.FisherMatrix method) getPriorDict() (pisa.utils.fisher_matrix.FisherMatrix method) getSigma() (pisa.utils.fisher_matrix.FisherMatrix method) getSigmaNoPriors() (pisa.utils.fisher_matrix.FisherMatrix method) getSigmaStatistical() (pisa.utils.fisher_matrix.FisherMatrix method) getSigmaSystematic() (pisa.utils.fisher_matrix.FisherMatrix method) getVariance() (pisa.utils.fisher_matrix.FisherMatrix method) globes (class in pisa.stages.osc.globes) gradient() (pisa.utils.hypersurface.hypersurface.HypersurfaceParam method) grads (pisa.stages.cont_sys.snowstorm_hist.snowstorm_hist attribute) grid (class in pisa.stages.data.grid) group_flavs_by_int_type() (pisa.utils.flavInt.NuFlavIntGroup method)

H

has_derived (pisa.core.param.ParamSet property) has_muon() (in module pisa.stages.reco.simple_param) hash (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) (pisa.core.events.Data property) (pisa.core.events.Events property) (pisa.core.map.Map property) (pisa.core.map.MapSet property) (pisa.core.param.Param property) (pisa.core.param.ParamSet property) (pisa.core.pipeline.Pipeline property) (pisa.core.stage.Stage property) (pisa.utils.config_parser.PISAConfigParser property) (pisa.utils.spline.Spline property) hash2hex() (in module pisa.utils.format) hash_file() (in module pisa.utils.hash) hash_maps() (pisa.core.map.MapSet method) hash_obj() (in module pisa.utils.hash) HASH_SIGFIGS (in module pisa)

hashable_state (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.map.Map property) hashes (pisa.core.map.MapSet property) HDFChain (class in pisa.utils.hdfchain) HDFTableProxy (class in pisa.utils.hdfchain) hillasg (class in pisa.stages.flux.hillasg) hist (class in pisa.stages.utils.hist) (pisa.core.map.Map property) histogram() (in module pisa.core.translation) (pisa.core.events.Data method) (pisa.core.events.Events method) histogram_set() (pisa.core.events.Data method) honda_ip (class in pisa.stages.flux.honda_ip) hr_range_formatter() (in module pisa.utils.format) hrbool2bool() (in module pisa.utils.format) hrlist2list() (in module pisa.utils.format) hrlol2lol() (in module pisa.utils.format) Hypersurface (class in pisa.utils.hypersurface.hypersurface) HypersurfaceInterpolator (class in pisa.utils.hypersurface.hyper_interpolator) HypersurfaceParam (class in pisa.utils.hypersurface.hypersurface) hypersurfaces (class in pisa.stages.discr_sys.hypersurfaces)

I

id_dupes() (pisa.utils.flavInt.FlavIntData method) IGNORE (pisa.utils.flavInt.IntType attribute) (pisa.utils.flavInt.NuFlav attribute) (pisa.utils.flavInt.NuFlavIntGroup attribute) imul() (in module pisa.utils.vectorizer) imul_and_scale() (in module pisa.utils.vectorizer) in_standalone_mode (pisa.core.stage.Stage attribute) inbounds_criteria (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) INCLUDE_AS_RE (pisa.utils.config_parser.PISAConfigParser attribute) include_attrs_for_hashes() (pisa.core.stage.Stage method) include_nlo (pisa.stages.osc.prob3.prob3 attribute) INCLUDE_RE (pisa.utils.config_parser.PISAConfigParser attribute) index() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.map.MapSet method) (pisa.core.param.ParamSet method) (pisa.core.pipeline.Pipeline method) index2coord() (pisa.core.binning.MultiDimBinning method) indexer() (pisa.core.binning.MultiDimBinning method) INFO (pisa.utils.log.Levels attribute) init_fig() (pisa.utils.plotter.Plotter method) init_params() (pisa.core.detectors.Detectors method) init_test() (in module pisa.stages.absorption.earth_absorption) (in module pisa.stages.aeff.aeff) (in module pisa.stages.aeff.param) (in module pisa.stages.aeff.weight) (in module pisa.stages.aeff.weight_hnl) (in module pisa.stages.cont_sys.snowstorm_hist) (in module pisa.stages.data.csv_data_hist) (in module pisa.stages.data.csv_icc_hist) (in module pisa.stages.data.csv_loader) (in module pisa.stages.data.grid) (in module pisa.stages.data.meows_loader) (in module pisa.stages.data.simple_data_loader) (in module pisa.stages.data.simple_signal) (in module pisa.stages.data.sqlite_loader) (in module pisa.stages.data.toy_event_generator) (in module pisa.stages.discr_sys.ultrasurfaces) (in module pisa.stages.flux.astrophysical) (in module pisa.stages.flux.barr_simple) (in module pisa.stages.flux.daemon_flux) (in module pisa.stages.flux.hillasg) (in module pisa.stages.flux.honda_ip) (in module pisa.stages.flux.mceq_barr) (in module pisa.stages.flux.mceq_barr_red) (in module pisa.stages.likelihood.generalized_llh_params) (in module pisa.stages.osc.decoherence) (in module pisa.stages.osc.external) (in module pisa.stages.osc.globes) (in module pisa.stages.osc.prob3) (in module pisa.stages.osc.two_nu_osc) (in module pisa.stages.reco.resolutions) (in module pisa.stages.utils.adhoc_sys) (in module pisa.stages.utils.bootstrap) (in module pisa.stages.utils.hist) (in module pisa.stages.utils.kde) (in module pisa.stages.utils.kfold) (in module pisa.stages.utils.set_variance) (in module pisa.stages.xsec.correct_charm_y) (in module pisa.stages.xsec.dis_sys) (in module pisa.stages.xsec.genie_sys) (in module pisa.stages.xsec.nutau_xsec)

initialize_weights() (pisa.stages.data.sqlite_loader.sqlite_loader method) initialized (pisa.utils.hypersurface.hypersurface.Hypersurface property) innermantle_density_scale (pisa.stages.osc.scaling_params.Core_scaling_wo_constrain property) insert() (pisa.core.param.ParamSet method) (pisa.utils.flavInt.NuFlavIntGroup method) insert_bootstrap_after_data_loader() (in module pisa.stages.utils.bootstrap) int16 (class in pisa) int2hex() (in module pisa.utils.format) int32 (class in pisa) int64 (class in pisa) int8 (class in pisa) int_type (pisa.utils.flavInt.NuFlavInt property) interpolation_param_names (pisa.utils.hypersurface.hyper_interpolator.HypersurfaceInterpolator property) interpret() (pisa.utils.flavInt.NuFlavIntGroup static method) interpret_data() (pisa.utils.data_proc_params.DataProcParams method) interpret_param_subfields() (in module pisa.utils.config_parser) interpret_quantity() (in module pisa.utils.comparisons) intp (in module pisa) IntType (class in pisa.utils.flavInt) is_bin_spacing_lin_uniform() (pisa.core.binning.OneDimBinning static method) is_bin_spacing_log_uniform() (pisa.core.binning.OneDimBinning static method) is_binning() (in module pisa.core.binning) is_binning_ok() (pisa.core.binning.OneDimBinning static method) is_compat() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) is_integer() (pisa.float32 method) (pisa.float64 method) is_irregular (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) is_lin (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) is_log (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) is_map (pisa.core.container.Container property) (pisa.core.container.ContainerSet property) (pisa.core.stage.Stage property) is_nominal (pisa.core.param.ParamSet property) is_psd() (in module pisa.utils.matrix) is_tex() (in module pisa.utils.format) isbarenumeric() (in module pisa.utils.comparisons) isj_bandwidth() (in module pisa.utils.vbwkde) isscalar() (in module pisa.utils.comparisons) issubset() (pisa.core.param.ParamSet method) issuperset() (pisa.core.param.ParamSet method) isunitless() (in module pisa.utils.comparisons) isvalidname() (in module pisa.utils.comparisons) IT_RE (pisa.utils.flavInt.IntType attribute) (pisa.utils.flavInt.NuFlavIntGroup attribute) item() (pisa.core.map.Map method) items() (pisa.OrderedDict method) iterbins() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.map.Map method) itercoords() (pisa.core.binning.MultiDimBinning method) (pisa.core.map.Map method) iterdims() (pisa.core.binning.MultiDimBinning method) iteredgetuples() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) ito() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.param.Param method) itruediv() (in module pisa.utils.vectorizer) ITYPE (in module pisa) IX (in module pisa.stages.osc.prob3numba.numba_osc_hostfuncs)

J

joined_string (pisa.core.events.Events property)

json_array_numpy() (pisa.utils.jsons.NumpyDecoder method) json_string() (in module pisa.utils.jsons)

K

kde (class in pisa.stages.utils.kde) kde_histogramdd() (in module pisa.utils.kde_hist) keep_inbounds() (pisa.core.events_pi.EventsPi method) keepInbounds() (pisa.core.events.Data method) (pisa.core.events.Events method)

keys (pisa.core.container.Container property) keys() (pisa.OrderedDict method) keys_incl_aux_data (pisa.core.container.Container property) kfold (class in pisa.stages.utils.kfold)

L

label (pisa.core.binning.OneDimBinning property) Layers (class in pisa.stages.osc.layers) Levels (class in pisa.utils.log) Likelihoods (class in pisa.utils.barlow) line_profile() (in module pisa.utils.profiler) link_containers() (pisa.core.container.ContainerSet method) list2hrlist() (in module pisa.utils.format) llh() (in module pisa.utils.stats) (pisa.core.map.Map method) (pisa.core.prior.Prior method) LLH_METRICS (in module pisa.utils.stats) llh_per_map() (pisa.core.map.MapSet method) llh_total() (pisa.core.map.MapSet method) load() (pisa.utils.cross_sections.CrossSections static method) load_2d_bartol_table() (in module pisa.utils.flux_weights) load_2d_honda_table() (in module pisa.utils.flux_weights) load_2d_table() (in module pisa.utils.flux_weights) load_3d_honda_table() (in module pisa.utils.flux_weights) load_3d_table() (in module pisa.utils.flux_weights) load_aeff_param() (in module pisa.stages.aeff.param)

load_and_modify_pipeline_cfg() (in module pisa.scripts.fit_hypersurfaces) load_events() (pisa.stages.data.simple_data_loader.simple_data_loader method) load_events_file() (pisa.core.events_pi.EventsPi method) load_hypersurfaces() (in module pisa.utils.hypersurface.hypersurface) load_interpolated_hypersurfaces() (in module pisa.utils.hypersurface.hyper_interpolator) load_root_file() (pisa.utils.cross_sections.CrossSections static method) loads() (in module pisa.utils.jsons) location (pisa.utils.config_parser.MutableMultiFileIterator property) log() (pisa.core.map.Map method) (pisa.core.map.MapSet method) log10() (pisa.core.map.Map method) (pisa.core.map.MapSet method) log_poisson() (in module pisa.utils.stats) log_smear() (in module pisa.utils.stats) logistic_function() (in module pisa.stages.reco.simple_param) logplot() (in module pisa.scripts.test_flux_weights) lookup() (in module pisa.core.translation) lookup_indices() (in module pisa.core.bin_indexing) lri_type (pisa.stages.osc.prob3.prob3 attribute) LRIParams (class in pisa.stages.osc.lri_params)

M

m (pisa.core.param.Param property) m_as() (pisa.core.param.Param method) magnitude (pisa.core.param.Param property) main() (in module pisa.core.detectors) (in module pisa.core.distribution_maker) (in module pisa.core.events_pi) (in module pisa.core.pipeline) (in module pisa.scripts.add_flux_to_events_file) (in module pisa.scripts.compare) (in module pisa.scripts.convert_config_format) (in module pisa.scripts.fit_hypersurfaces) (in module pisa.scripts.make_events_file) (in module pisa.scripts.make_nufit_theta23_spline_priors) (in module pisa.scripts.test_flux_weights) (in module pisa.stages.osc.prob3numba.numba_osc_tests) (in module pisa.stages.osc.prob3numba.test_numba) (in module pisa.utils.llh_server) make_2d_flux_map() (in module pisa.stages.flux.daemon_flux) make_prior_dict() (in module pisa.scripts.make_nufit_theta23_spline_priors) make_valid_python_name() (in module pisa.utils.format) makeEventsFile() (in module pisa.scripts.make_events_file) manual_test_CrossSections() (in module pisa.utils.cross_sections) Map (class in pisa.core.map) maperror_logmsg() (in module pisa.utils.stats) MapSet (class in pisa.core.map) mark_changed() (pisa.core.container.Container method) (pisa.core.container.VirtualContainer method) mark_valid() (pisa.core.container.Container method) (pisa.core.container.VirtualContainer method) mask (pisa.core.binning.MultiDimBinning property) mask_hash (pisa.core.binning.MultiDimBinning property) Mass_scaling (class in pisa.stages.osc.scaling_params) MAT_DOT_MAT_SUBSCR (in module pisa.stages.osc.prob3numba.numba_osc_tests) matrix_dot_matrix() (in module pisa.utils.numba_tools) matrix_dot_vector() (in module pisa.utils.numba_tools) max_layers (pisa.stages.osc.layers.Layers attribute) mc_histograms (pisa.utils.barlow.Likelihoods attribute) mceq_barr (class in pisa.stages.flux.mceq_barr) mceq_barr_red (class in pisa.stages.flux.mceq_barr_red) mcllh_eff() (in module pisa.utils.stats) (pisa.core.map.Map method) mcllh_mean() (in module pisa.utils.stats) (pisa.core.map.Map method) MCMC_sampling() (pisa.analysis.analysis.BasicAnalysis method) MCSimRunSettings (class in pisa.utils.mcSimRunSettings) meows_loader (class in pisa.stages.data.meows_loader) meshgrid() (pisa.core.binning.MultiDimBinning method) meta_eq() (pisa.core.events.Data method) (pisa.core.events.Events method) metric() (pisa.core.map.Map method) metric_per_map() (pisa.core.map.MapSet method) metric_total() (pisa.core.map.Map method) (pisa.core.map.MapSet method) middlemantle_density_scale (pisa.stages.osc.scaling_params.Core_scaling_wo_constrain property) midpoints (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) MINIMIZERS_ACCEPTING_CONSTRS (in module pisa.analysis.analysis) MINIMIZERS_USING_SYMM_GRAD (in module pisa.analysis.analysis) mix_matrix (pisa.stages.osc.osc_params.OscParams attribute) (pisa.stages.osc.osc_params.OscParams property) mix_matrix_complex (pisa.stages.osc.osc_params.OscParams attribute) (pisa.stages.osc.osc_params.OscParams property) mix_matrix_reparam (pisa.stages.osc.osc_params.OscParams attribute) (pisa.stages.osc.osc_params.OscParams property) mix_matrix_reparam_complex (pisa.stages.osc.osc_params.OscParams attribute) (pisa.stages.osc.osc_params.OscParams property) mkdir() (in module pisa.utils.fileio) mod_chi2() (in module pisa.utils.stats) (pisa.core.map.Map method) module pisa pisa.analysis pisa.analysis.analysis pisa.core pisa.core.bin_indexing pisa.core.binning pisa.core.container pisa.core.detectors pisa.core.distribution_maker pisa.core.events pisa.core.events_pi pisa.core.map pisa.core.param pisa.core.pipeline pisa.core.prior pisa.core.stage pisa.core.translation pisa.scripts pisa.scripts.add_flux_to_events_file pisa.scripts.compare pisa.scripts.convert_config_format pisa.scripts.fit_hypersurfaces pisa.scripts.make_events_file pisa.scripts.make_nufit_theta23_spline_priors pisa.scripts.test_flux_weights pisa.stages pisa.stages.absorption pisa.stages.absorption.earth_absorption pisa.stages.aeff pisa.stages.aeff.aeff pisa.stages.aeff.param pisa.stages.aeff.weight pisa.stages.aeff.weight_hnl pisa.stages.background pisa.stages.background.atm_muons pisa.stages.cont_sys pisa.stages.cont_sys.snowstorm_hist pisa.stages.data pisa.stages.data.csv_data_hist pisa.stages.data.csv_icc_hist pisa.stages.data.csv_loader pisa.stages.data.grid pisa.stages.data.meows_loader pisa.stages.data.simple_data_loader pisa.stages.data.simple_signal pisa.stages.data.sqlite_loader pisa.stages.data.toy_event_generator pisa.stages.discr_sys pisa.stages.discr_sys.csv_hypersurfaces pisa.stages.discr_sys.hypersurfaces pisa.stages.discr_sys.ultrasurfaces pisa.stages.flux pisa.stages.flux.astrophysical pisa.stages.flux.barr_simple pisa.stages.flux.daemon_flux pisa.stages.flux.hillasg pisa.stages.flux.honda_ip pisa.stages.flux.mceq_barr pisa.stages.flux.mceq_barr_red pisa.stages.likelihood pisa.stages.likelihood.generalized_llh_params pisa.stages.osc pisa.stages.osc.decay_params pisa.stages.osc.decoherence pisa.stages.osc.external pisa.stages.osc.globes pisa.stages.osc.layers pisa.stages.osc.lri_params pisa.stages.osc.nsi_params pisa.stages.osc.osc_params pisa.stages.osc.prob3 pisa.stages.osc.prob3numba pisa.stages.osc.prob3numba.numba_osc_hostfuncs pisa.stages.osc.prob3numba.numba_osc_kernels pisa.stages.osc.prob3numba.numba_osc_tests pisa.stages.osc.prob3numba.test_numba pisa.stages.osc.scaling_params pisa.stages.osc.two_nu_osc pisa.stages.reco pisa.stages.reco.resolutions pisa.stages.reco.simple_param pisa.stages.utils pisa.stages.utils.add_indices pisa.stages.utils.adhoc_sys pisa.stages.utils.bootstrap pisa.stages.utils.fix_error pisa.stages.utils.hist pisa.stages.utils.kde pisa.stages.utils.kfold pisa.stages.utils.set_variance pisa.stages.xsec pisa.stages.xsec.correct_charm_y pisa.stages.xsec.dis_sys pisa.stages.xsec.genie_sys pisa.stages.xsec.nutau_xsec pisa.utils pisa.utils.barlow pisa.utils.barr_parameterization pisa.utils.callable pisa.utils.comparisons pisa.utils.config_parser pisa.utils.cross_sections pisa.utils.data_proc_params pisa.utils.fileio pisa.utils.fisher_matrix pisa.utils.flavInt pisa.utils.flux_weights pisa.utils.format pisa.utils.gaussians pisa.utils.hash pisa.utils.hdf pisa.utils.hdfchain pisa.utils.hypersurface pisa.utils.hypersurface.hyper_interpolator pisa.utils.hypersurface.hypersurface pisa.utils.hypersurface.hypersurface_plotting pisa.utils.jsons pisa.utils.kde_hist pisa.utils.likelihood_functions pisa.utils.llh_defs pisa.utils.llh_defs.poisson pisa.utils.llh_defs.poisson_gamma_mixtures pisa.utils.llh_server pisa.utils.log pisa.utils.matrix pisa.utils.mcSimRunSettings pisa.utils.numba_tools pisa.utils.plotter pisa.utils.profiler pisa.utils.pull_method pisa.utils.random_numbers pisa.utils.resources pisa.utils.spline pisa.utils.spline_smooth pisa.utils.stats pisa.utils.vbwkde pisa.utils.vectorizer

move_to_end() (pisa.OrderedDict method) MUL (pisa.utils.callable.OPS attribute) mul() (in module pisa.utils.vectorizer) MultiDimBinning (class in pisa.core.binning) muons (pisa.core.events.Data property) MutableMultiFileIterator (class in pisa.utils.config_parser) myjit() (in module pisa.utils.numba_tools)

N

n_layers (pisa.stages.osc.layers.Layers attribute) (pisa.stages.osc.layers.Layers property) name (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.map.Map property) (pisa.core.map.MapSet property) (pisa.utils.callable.Var property) (pisa.utils.spline.Spline property) name_val_dict (pisa.core.param.ParamSet property) namedtuple() (in module pisa) names (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.VarBinning property) (pisa.core.container.ContainerSet property) (pisa.core.events.Data property) (pisa.core.map.MapSet property) (pisa.core.param.ParamSet property) nc (pisa.utils.flavInt.IntType property) (pisa.utils.flavInt.NuFlavInt property) NC_CODE (pisa.utils.flavInt.IntType attribute) nc_flavints (pisa.utils.flavInt.NuFlavIntGroup property) nc_flavs (pisa.utils.flavInt.NuFlavIntGroup property) neutrino_decay (pisa.stages.osc.prob3.prob3 attribute) neutrinos (pisa.core.events.Data property) new_from_root() (pisa.utils.cross_sections.CrossSections class method) next_color() (pisa.utils.plotter.Plotter method) nofit_hypo() (pisa.analysis.analysis.Analysis method) noise (pisa.core.events.Data property) nominal_value (pisa.core.param.Param property) nominal_values (pisa.core.map.Map property) (pisa.core.param.ParamSet property) (pisa.utils.hypersurface.hypersurface.Hypersurface property) nominal_values_hash (pisa.core.param.ParamSet property) norm_conv_poisson() (in module pisa.utils.stats) normal_log_probability() (in module pisa.utils.llh_defs.poisson) normalize_values (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.map.Map property)

normalized_state (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) normQuant() (in module pisa.utils.comparisons) nselections (pisa.core.binning.VarBinning property) nsi_type (pisa.stages.osc.prob3.prob3 attribute) NSIParams (class in pisa.stages.osc.nsi_params) nsort() (in module pisa.utils.fileio) nsort_key_func() (in module pisa.utils.fileio) NUE_CODE (pisa.utils.flavInt.NuFlav attribute) NUEBAR_CODE (pisa.utils.flavInt.NuFlav attribute) NuFlav (class in pisa.utils.flavInt) NuFlavInt (class in pisa.utils.flavInt) NuFlavIntGroup (class in pisa.utils.flavInt) num_bins (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) num_dims (pisa.core.binning.MultiDimBinning property) (pisa.core.container.Container property) num_entries (pisa.core.map.Map property) num_events_per_bin (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) num_fit_coeffts (pisa.utils.hypersurface.hypersurface.Hypersurface property) num_fit_sets (pisa.utils.hypersurface.hypersurface.Hypersurface property) num_interp_params (pisa.utils.hypersurface.hyper_interpolator.HypersurfaceInterpolator property) numba_jit() (in module pisa) NUMBER_RE (in module pisa.utils.format) NUMBER_RESTR (in module pisa.utils.format) NumpyDecoder (class in pisa.utils.jsons) NumpyEncoder (class in pisa.utils.jsons) NUMU_CODE (pisa.utils.flavInt.NuFlav attribute) NUMUBAR_CODE (pisa.utils.flavInt.NuFlav attribute) NUTAU_CODE (pisa.utils.flavInt.NuFlav attribute) nutau_xsec (class in pisa.stages.xsec.nutau_xsec) NUTAUBAR_CODE (pisa.utils.flavInt.NuFlav attribute)

O

OMP_NUM_THREADS (in module pisa) OneDimBinning (class in pisa.core.binning) ones() (pisa.core.binning.MultiDimBinning method) open_resource() (in module pisa.utils.resources) OPS (class in pisa.utils.callable) optionxform() (pisa.utils.config_parser.PISAConfigParser method)

ORDER_OF_MAG_TO_SI_PREFIX (in module pisa.utils.format) OrderedDict (class in pisa) osc_probs_layers_kernel() (in module pisa.stages.osc.prob3numba.numba_osc_kernels) OscParams (class in pisa.stages.osc.osc_params) output_binning (pisa.core.pipeline.Pipeline property) oversample() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method)

P

Param (class in pisa.core.param) param (class in pisa.stages.aeff.param) param_hash (pisa.core.stage.Stage attribute) param_names (pisa.utils.hypersurface.hyper_interpolator.HypersurfaceInterpolator property) (pisa.utils.hypersurface.hypersurface.Hypersurface property) param_selections (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) (pisa.core.param.ParamSelector property) (pisa.core.pipeline.Pipeline property) (pisa.core.stage.Stage property) params (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) (pisa.core.param.ParamSelector property) (pisa.core.pipeline.Pipeline property) (pisa.core.stage.Stage property) ParamSelector (class in pisa.core.param) ParamSet (class in pisa.core.param) parse_args() (in module pisa.core.detectors) (in module pisa.core.distribution_maker) (in module pisa.core.pipeline) (in module pisa.scripts.compare) (in module pisa.scripts.convert_config_format) (in module pisa.scripts.fit_hypersurfaces) (in module pisa.scripts.make_events_file) parse_fit_config() (in module pisa.scripts.fit_hypersurfaces) parse_param() (in module pisa.utils.config_parser) parse_pipeline_config() (in module pisa.utils.config_parser) parse_quantity() (in module pisa.utils.config_parser) parse_string_literal() (in module pisa.utils.config_parser) PART_CODE (pisa.utils.flavInt.NuFlav attribute) particle (pisa.utils.flavInt.NuFlav property) (pisa.utils.flavInt.NuFlavInt property) particles (pisa.utils.flavInt.NuFlavIntGroup property) phi12 (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) phi13 (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) phi23 (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property) pidx() (pisa.utils.flavInt.NuFlav method) (pisa.utils.flavInt.NuFlavInt method) Pipeline (class in pisa.core.pipeline) pipeline_cfg_from_states() (in module pisa.utils.hypersurface.hyper_interpolator) pipelines (pisa.core.distribution_maker.DistributionMaker property) pisa module pisa.analysis module pisa.analysis.analysis module pisa.core module pisa.core.bin_indexing module pisa.core.binning module pisa.core.container module pisa.core.detectors module pisa.core.distribution_maker module pisa.core.events module pisa.core.events_pi module pisa.core.map module pisa.core.param module pisa.core.pipeline module pisa.core.prior module pisa.core.stage module pisa.core.translation module pisa.scripts module pisa.scripts.add_flux_to_events_file module pisa.scripts.compare module pisa.scripts.convert_config_format module pisa.scripts.fit_hypersurfaces module pisa.scripts.make_events_file module pisa.scripts.make_nufit_theta23_spline_priors module pisa.scripts.test_flux_weights module pisa.stages module pisa.stages.absorption module pisa.stages.absorption.earth_absorption module pisa.stages.aeff module pisa.stages.aeff.aeff module pisa.stages.aeff.param module pisa.stages.aeff.weight module pisa.stages.aeff.weight_hnl module pisa.stages.background module pisa.stages.background.atm_muons module pisa.stages.cont_sys module pisa.stages.cont_sys.snowstorm_hist module pisa.stages.data module pisa.stages.data.csv_data_hist module pisa.stages.data.csv_icc_hist module pisa.stages.data.csv_loader module pisa.stages.data.grid module pisa.stages.data.meows_loader module pisa.stages.data.simple_data_loader module pisa.stages.data.simple_signal module pisa.stages.data.sqlite_loader module pisa.stages.data.toy_event_generator module pisa.stages.discr_sys module pisa.stages.discr_sys.csv_hypersurfaces module pisa.stages.discr_sys.hypersurfaces module pisa.stages.discr_sys.ultrasurfaces module pisa.stages.flux module pisa.stages.flux.astrophysical module pisa.stages.flux.barr_simple module pisa.stages.flux.daemon_flux module pisa.stages.flux.hillasg module pisa.stages.flux.honda_ip module pisa.stages.flux.mceq_barr module pisa.stages.flux.mceq_barr_red module pisa.stages.likelihood module pisa.stages.likelihood.generalized_llh_params module pisa.stages.osc module pisa.stages.osc.decay_params module pisa.stages.osc.decoherence module pisa.stages.osc.external module pisa.stages.osc.globes module pisa.stages.osc.layers module pisa.stages.osc.lri_params module pisa.stages.osc.nsi_params module pisa.stages.osc.osc_params module pisa.stages.osc.prob3 module pisa.stages.osc.prob3numba module pisa.stages.osc.prob3numba.numba_osc_hostfuncs module pisa.stages.osc.prob3numba.numba_osc_kernels module

pisa.stages.osc.prob3numba.numba_osc_tests module pisa.stages.osc.prob3numba.test_numba module pisa.stages.osc.scaling_params module pisa.stages.osc.two_nu_osc module pisa.stages.reco module pisa.stages.reco.resolutions module pisa.stages.reco.simple_param module pisa.stages.utils module pisa.stages.utils.add_indices module pisa.stages.utils.adhoc_sys module pisa.stages.utils.bootstrap module pisa.stages.utils.fix_error module pisa.stages.utils.hist module pisa.stages.utils.kde module pisa.stages.utils.kfold module pisa.stages.utils.set_variance module pisa.stages.xsec module pisa.stages.xsec.correct_charm_y module pisa.stages.xsec.dis_sys module pisa.stages.xsec.genie_sys module pisa.stages.xsec.nutau_xsec module pisa.utils module pisa.utils.barlow module pisa.utils.barr_parameterization module pisa.utils.callable module pisa.utils.comparisons module pisa.utils.config_parser module pisa.utils.cross_sections module pisa.utils.data_proc_params module pisa.utils.fileio module pisa.utils.fisher_matrix module pisa.utils.flavInt module pisa.utils.flux_weights module pisa.utils.format module pisa.utils.gaussians module pisa.utils.hash module pisa.utils.hdf module pisa.utils.hdfchain module pisa.utils.hypersurface module pisa.utils.hypersurface.hyper_interpolator module pisa.utils.hypersurface.hypersurface module pisa.utils.hypersurface.hypersurface_plotting module pisa.utils.jsons module pisa.utils.kde_hist module pisa.utils.likelihood_functions module pisa.utils.llh_defs module pisa.utils.llh_defs.poisson module pisa.utils.llh_defs.poisson_gamma_mixtures module pisa.utils.llh_server module pisa.utils.log module pisa.utils.matrix module pisa.utils.mcSimRunSettings module pisa.utils.numba_tools module pisa.utils.plotter module pisa.utils.profiler module pisa.utils.pull_method module pisa.utils.random_numbers module pisa.utils.resources module pisa.utils.spline module pisa.utils.spline_smooth module pisa.utils.stats module pisa.utils.vbwkde module pisa.utils.vectorizer module PISA_NUM_THREADS (in module pisa) PISAConfigParser (class in pisa.utils.config_parser) plot() (pisa.core.map.Map method) (pisa.core.map.MapSet method) (pisa.utils.cross_sections.CrossSections method) plot_1d_all() (pisa.utils.plotter.Plotter method) plot_1d_array() (pisa.utils.plotter.Plotter method) plot_1d_cmp() (pisa.utils.plotter.Plotter method) plot_1d_projection() (pisa.utils.plotter.Plotter method) plot_1d_ratio() (pisa.utils.plotter.Plotter method) plot_1d_single() (pisa.utils.plotter.Plotter method) plot_1d_slices() (in module pisa.scripts.test_flux_weights) plot_1d_slices_array() (pisa.utils.plotter.Plotter method) plot_1d_stack() (pisa.utils.plotter.Plotter method) plot_2d_array() (pisa.utils.plotter.Plotter method) plot_2d_map() (pisa.utils.plotter.Plotter method) plot_2d_single() (pisa.utils.plotter.Plotter method) plot_array() (pisa.utils.plotter.Plotter method) plot_bin_fits() (in module pisa.utils.hypersurface.hypersurface_plotting) plot_bin_fits_2d() (in module pisa.utils.hypersurface.hypersurface_plotting) plot_fits_in_bin() (pisa.utils.hypersurface.hyper_interpolator.HypersurfaceInterpolator method) plot_xsec() (pisa.utils.plotter.Plotter method) Plotter (class in pisa.utils.plotter) poisson() (in module pisa.utils.llh_defs.poisson) poisson_gamma() (in module pisa.utils.likelihood_functions) poissonLLH() (in module pisa.utils.likelihood_functions) pop() (pisa.core.map.MapSet method) (pisa.OrderedDict method) popitem() (pisa.OrderedDict method) populate_global_namespace() (pisa.utils.data_proc_params.DataProcParams static method) potential_matrix_emu (pisa.stages.osc.lri_params.LRIParams property) potential_matrix_etau (pisa.stages.osc.lri_params.LRIParams property) potential_matrix_mutau (pisa.stages.osc.lri_params.LRIParams property) POW (pisa.utils.callable.OPS attribute) pow() (in module pisa.utils.vectorizer) POWER_OF_1024_TO_BIN_PREFIX (in module pisa.utils.format) powerLawIntegral() (in module pisa.scripts.make_events_file) pprint (pisa.analysis.analysis.BasicAnalysis attribute) prepare_interpolated_fit() (in module pisa.utils.hypersurface.hyper_interpolator) printResults() (pisa.utils.fisher_matrix.FisherMatrix method) printResultsSorted() (pisa.utils.fisher_matrix.FisherMatrix method) Prior (class in pisa.core.prior) prior (pisa.core.param.Param property) prior_chi2 (pisa.core.param.Param property) prior_llh (pisa.core.param.Param property) prior_penalty() (pisa.core.param.DerivedParam method) (pisa.core.param.Param method) priors (pisa.core.param.ParamSet property) priors_chi2 (pisa.core.param.ParamSet property) priors_llh (pisa.core.param.ParamSet property) priors_penalties() (pisa.core.param.ParamSet method) priors_penalty() (pisa.core.param.ParamSet method) prob3 (class in pisa.stages.osc.prob3) prob3_codes (pisa.utils.flavInt.NuFlav property) profile (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) (pisa.core.pipeline.Pipeline property) (pisa.core.stage.Stage attribute) profile() (in module pisa.utils.profiler) project() (pisa.core.map.Map method) (pisa.core.map.MapSet method) project_1d() (pisa.utils.plotter.Plotter method)

Q

Q_ (in module pisa)

query_database() (pisa.stages.data.sqlite_loader.sqlite_loader method)

R

randomize() (pisa.core.param.Param method) randomize_free() (pisa.core.param.ParamSet method) randomize_free_params() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) range (pisa.core.binning.OneDimBinning property) (pisa.core.param.DerivedParam property) (pisa.core.param.Param property) ranges (pisa.core.param.ParamSet property) re_weight_hnl() (in module pisa.stages.aeff.weight_hnl) read() (pisa.utils.config_parser.PISAConfigParser method) (pisa.utils.hdfchain.HDFTableProxy method) read_iter() (pisa.utils.hdfchain.HDFTableProxy method) rebin() (in module pisa.core.map) (pisa.core.map.Map method) (pisa.core.map.MapSet method) receive_obj() (in module pisa.utils.llh_server) record_event_properties() (pisa.stages.data.simple_data_loader.simple_data_loader method) recursiveAllclose() (in module pisa.utils.comparisons) recursiveEquality() (in module pisa.utils.comparisons) reduceToHist() (in module pisa.core.map) rehash() (pisa.core.binning.OneDimBinning method) remove() (pisa.core.binning.MultiDimBinning method) (pisa.utils.flavInt.NuFlavIntGroup method) REMOVE_OPTION_RE (in module pisa.scripts.fit_hypersurfaces) removeAllPriors() (pisa.utils.fisher_matrix.FisherMatrix method) removeParameter() (pisa.utils.fisher_matrix.FisherMatrix method) renameParameter() (pisa.utils.fisher_matrix.FisherMatrix method) reorder_dimensions() (pisa.core.binning.MultiDimBinning method) (pisa.core.map.Map method) (pisa.core.map.MapSet method) reparam_mix_matrix (pisa.stages.osc.prob3.prob3 attribute) replace() (pisa.core.param.ParamSet method) replace_where_counts_gt() (in module pisa.utils.vectorizer)

report() (pisa.utils.hypersurface.hypersurface.Hypersurface method) report_profile() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.pipeline.Pipeline method) (pisa.core.stage.Stage method) representation (pisa.core.container.Container property) (pisa.core.container.ContainerSet property) (pisa.core.container.VirtualContainer property) representation_keys (pisa.core.container.Container property) representations (pisa.core.container.Container property) resample() (in module pisa.core.translation) (pisa.core.container.Container method) reset() (pisa.analysis.analysis.Counter method) (pisa.core.param.Param method) (pisa.utils.barlow.Likelihoods method) (pisa.utils.spline.CombinedSpline method) reset_all() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.param.ParamSet method) reset_colors() (pisa.utils.plotter.Plotter method) reset_free() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.param.ParamSet method) resolutions (class in pisa.stages.reco.resolutions) retrieve_expression() (pisa.utils.data_proc_params.DataProcParams static method) retrieve_node_data() (pisa.utils.data_proc_params.DataProcParams static method) return_mapset() (pisa.utils.spline.CombinedSpline method) round2int() (pisa.core.map.Map method) run() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.pipeline.Pipeline method) (pisa.core.stage.Stage method) run_interpolated_fit() (in module pisa.utils.hypersurface.hyper_interpolator) run_test_case() (in module pisa.stages.osc.prob3numba.numba_osc_tests)

S

save() (pisa.core.events.Events method) (pisa.utils.cross_sections.CrossSections method) (pisa.utils.flavInt.FlavIntData method) (pisa.utils.flavInt.FlavIntDataGroup method) saveFile() (pisa.utils.fisher_matrix.FisherMatrix method) scale_map() (pisa.utils.spline.CombinedSpline method) scale_maps() (pisa.utils.spline.CombinedSpline method) scaling() (pisa.stages.osc.layers.Layers method) scaling_array (pisa.stages.osc.scaling_params.Core_scaling_w_constrain property) scaling_factor_array (pisa.stages.osc.scaling_params.Core_scaling_wo_constrain property) scan() (pisa.analysis.analysis.Analysis method) scipy_constraints_to_callables() (in module pisa.analysis.analysis) SECTCRE (pisa.utils.config_parser.PISAConfigParser attribute) select_params() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.param.ParamSelector method) (pisa.core.pipeline.Pipeline method) (pisa.core.stage.Stage method) selections (pisa.core.binning.VarBinning property) send_obj() (in module pisa.utils.llh_server) sep_three_tens() (in module pisa.utils.format) serializable_state (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.map.Map property) (pisa.core.map.MapSet property) (pisa.core.param.DerivedParam property) (pisa.core.param.Param property) (pisa.core.param.ParamSet property) (pisa.core.prior.Prior property) (pisa.utils.callable.Funct property) (pisa.utils.callable.OPS property) (pisa.utils.callable.Var property) (pisa.utils.hypersurface.hypersurface.Hypersurface property) (pisa.utils.hypersurface.hypersurface.HypersurfaceParam property) serialize_pipeline_cfg() (in module pisa.utils.hypersurface.hyper_interpolator) serve() (in module pisa.utils.llh_server) service_name (pisa.core.stage.Stage attribute) service_names (pisa.core.pipeline.Pipeline property) set() (pisa.utils.config_parser.PISAConfigParser method) set_aux_data() (pisa.core.container.Container method) (pisa.core.container.VirtualContainer method) set_bar_ssep() (in module pisa.utils.flavInt) set_constant() (in module pisa.stages.utils.set_variance) set_data() (pisa.utils.barlow.Likelihoods method) set_errors() (pisa.core.map.Map method) set_free_params() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) set_mc() (pisa.utils.barlow.Likelihoods method) set_minimizer_defaults() (in module pisa.analysis.analysis) set_nominal_by_current_values() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.param.ParamSet method) set_nominal_to_current_value() (pisa.core.param.Param method) SET_OPTION_RE (in module pisa.scripts.fit_hypersurfaces) set_poisson_errors() (pisa.core.map.Map method) (pisa.core.map.MapSet method) set_unweighted() (pisa.utils.barlow.Likelihoods method) set_values() (pisa.core.param.ParamSet method) set_variance (class in pisa.stages.utils.set_variance) set_verbosity() (in module pisa.utils.log) set_version() (pisa.utils.cross_sections.CrossSections method) setdefault() (pisa.OrderedDict method) setElecFrac() (pisa.stages.osc.layers.Layers method) setLabel() (pisa.utils.fisher_matrix.FisherMatrix method) setPrior() (pisa.utils.fisher_matrix.FisherMatrix method) setup() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.pipeline.Pipeline method) (pisa.core.stage.Stage method) setup_function() (pisa.core.stage.Stage method) (pisa.stages.absorption.earth_absorption.earth_absorption method) (pisa.stages.background.atm_muons.atm_muons method) (pisa.stages.cont_sys.snowstorm_hist.snowstorm_hist method) (pisa.stages.data.csv_data_hist.csv_data_hist method) (pisa.stages.data.csv_icc_hist.csv_icc_hist method) (pisa.stages.data.csv_loader.csv_loader method) (pisa.stages.data.grid.grid method) (pisa.stages.data.meows_loader.meows_loader method) (pisa.stages.data.simple_data_loader.simple_data_loader method) (pisa.stages.data.simple_signal.simple_signal method) (pisa.stages.data.sqlite_loader.sqlite_loader method) (pisa.stages.data.toy_event_generator.toy_event_generator method) (pisa.stages.discr_sys.csv_hypersurfaces.csv_hypersurfaces method) (pisa.stages.discr_sys.hypersurfaces.hypersurfaces method) (pisa.stages.discr_sys.ultrasurfaces.ultrasurfaces method) (pisa.stages.flux.astrophysical.astrophysical method) (pisa.stages.flux.barr_simple.barr_simple method) (pisa.stages.flux.daemon_flux.daemon_flux method) (pisa.stages.flux.hillasg.hillasg method) (pisa.stages.flux.honda_ip.honda_ip method) (pisa.stages.flux.mceq_barr.mceq_barr method) (pisa.stages.flux.mceq_barr_red.mceq_barr_red method) (pisa.stages.likelihood.generalized_llh_params.generalized_llh_params method) (pisa.stages.osc.decoherence.decoherence method) (pisa.stages.osc.external.external method) (pisa.stages.osc.globes.globes method) (pisa.stages.osc.prob3.prob3 method) (pisa.stages.reco.resolutions.resolutions method) (pisa.stages.reco.simple_param.simple_param method) (pisa.stages.utils.add_indices.add_indices method) (pisa.stages.utils.adhoc_sys.adhoc_sys method) (pisa.stages.utils.bootstrap.bootstrap method) (pisa.stages.utils.fix_error.fix_error method) (pisa.stages.utils.hist.hist method) (pisa.stages.utils.kde.kde method) (pisa.stages.utils.kfold.kfold method) (pisa.stages.utils.set_variance.set_variance method) (pisa.stages.xsec.correct_charm_y.correct_charm_y method) (pisa.stages.xsec.dis_sys.dis_sys method) (pisa.stages.xsec.genie_sys.genie_sys method) (pisa.stages.xsec.nutau_xsec.nutau_xsec method)

shape (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.container.Container property) (pisa.core.container.VirtualContainer property) (pisa.core.map.Map property) (pisa.utils.barlow.Likelihoods attribute) shared_param_ind_list (pisa.core.detectors.Detectors property) SI_PREFIX_TO_ORDER_OF_MAG (in module pisa.utils.format) signed_sqrt_mod_chi2() (in module pisa.utils.stats) (pisa.core.map.Map method) simple_data_loader (class in pisa.stages.data.simple_data_loader) simple_param (class in pisa.stages.reco.simple_param) simple_pid_parameterization() (in module pisa.stages.reco.simple_param) simple_reco_coszen_parameterization() (in module pisa.stages.reco.simple_param) simple_reco_energy_parameterization() (in module pisa.stages.reco.simple_param) simple_signal (class in pisa.stages.data.simple_signal) simple_str() (pisa.utils.flavInt.NuFlavIntGroup method) simple_tex() (pisa.utils.flavInt.NuFlavIntGroup method) SIN (pisa.utils.callable.OPS attribute) sin (pisa.utils.callable.TrigOps property) sin() (in module pisa.utils.callable) sin12 (pisa.stages.osc.osc_params.OscParams property) sin13 (pisa.stages.osc.osc_params.OscParams property) sin14 (pisa.stages.osc.osc_params.OscParams property) sin23 (pisa.stages.osc.osc_params.OscParams property) size (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.container.Container property) (pisa.core.container.VirtualContainer property) (pisa.core.map.Map property) slice() (pisa.core.binning.MultiDimBinning method) (pisa.core.map.Map method) slices_array() (pisa.utils.plotter.Plotter method) SMALL_POS (in module pisa.utils.stats) snowstorm_hist (class in pisa.stages.cont_sys.snowstorm_hist) sortByParam() (pisa.utils.fisher_matrix.FisherMatrix method) source_code_hash (pisa.core.detectors.Detectors property) (pisa.core.distribution_maker.DistributionMaker property) (pisa.core.pipeline.Pipeline property) (pisa.core.stage.Stage property) spectral_index_scale() (in module pisa.stages.flux.astrophysical) (in module pisa.stages.flux.barr_simple) (in module pisa.stages.flux.mceq_barr) (in module pisa.stages.flux.mceq_barr_red) Spline (class in pisa.utils.spline) spline (pisa.utils.spline.Spline property) spline_smooth() (in module pisa.utils.spline_smooth) split() (in module pisa.utils.format) (pisa.core.map.Map method) split_nu_events_by_flavor_and_interaction() (in module pisa.core.events_pi) sqlite_loader (class in pisa.stages.data.sqlite_loader) sqrt() (in module pisa.utils.vectorizer) (pisa.core.map.Map method) (pisa.core.map.MapSet method) squeeze() (pisa.core.binning.MultiDimBinning method) (pisa.core.map.Map method) (pisa.core.map.MapSet method) stability_test() (in module pisa.stages.osc.prob3numba.numba_osc_tests) Stage (class in pisa.core.stage) stage_name (pisa.core.stage.Stage attribute) stage_names (pisa.core.pipeline.Pipeline property) stages (pisa.core.pipeline.Pipeline property) state (pisa.core.param.DerivedParam property) (pisa.core.param.Param property) (pisa.core.param.ParamSet property) (pisa.core.prior.Prior property) (pisa.utils.callable.Funct property) (pisa.utils.callable.OPS property) (pisa.utils.callable.Var property) std_devs (pisa.core.map.Map property) StdNSIParams (class in pisa.stages.osc.nsi_params) strip_outer_dollars() (in module pisa.utils.format) strip_outer_parens() (in module pisa.utils.format) subselect() (pisa.utils.data_proc_params.DataProcParams static method) sum() (pisa.core.map.Map method) (pisa.core.map.MapSet method) switch_to_file() (pisa.utils.config_parser.MutableMultiFileIterator method) SYS_FUNC_LIST_OPTION (in module pisa.scripts.fit_hypersurfaces) SYS_LIST_OPTION (in module pisa.scripts.fit_hypersurfaces) SYS_SET_OPTION (in module pisa.scripts.fit_hypersurfaces)

T

TableAccessor (class in pisa.utils.hdfchain) tabulate() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.param.ParamSet method) (pisa.core.pipeline.Pipeline method) take_average() (in module pisa.scripts.test_flux_weights) TAN (pisa.utils.callable.OPS attribute) tan (pisa.utils.callable.TrigOps property) tan() (in module pisa.utils.callable) test_bootstrap() (in module pisa.stages.utils.bootstrap) test_clear_matrix() (in module pisa.utils.numba_tools) test_conjugate() (in module pisa.utils.numba_tools) test_conjugate_transpose() (in module pisa.utils.numba_tools) test_container() (in module pisa.core.container) test_container_set() (in module pisa.core.container) test_copy_matrix() (in module pisa.utils.numba_tools) test_Detectors() (in module pisa.core.detectors) test_DistributionMaker() (in module pisa.core.distribution_maker) test_Events() (in module pisa.core.events) test_fbwkde() (in module pisa.utils.vbwkde) test_find_index() (in module pisa.core.translation) test_format_num() (in module pisa.utils.format) test_gaussians() (in module pisa.utils.gaussians) test_get_random_state() (in module pisa.utils.random_numbers) test_hash_file() (in module pisa.utils.hash) test_hash_obj() (in module pisa.utils.hash) test_hdf() (in module pisa.utils.hdf) test_histogram() (in module pisa.core.translation) test_hr_range_formatter() (in module pisa.utils.format) test_isscalar() (in module pisa.utils.comparisons) test_isunitless() (in module pisa.utils.comparisons) test_kde_histogramdd() (in module pisa.utils.kde_hist) test_line_profile() (in module pisa.utils.profiler) test_list2hrlist() (in module pisa.utils.format) test_lookup_indices() (in module pisa.core.bin_indexing) test_Map() (in module pisa.core.map) test_MapSet() (in module pisa.core.map) test_matrix_dot_matrix() (in module pisa.utils.numba_tools) test_matrix_dot_vector() (in module pisa.utils.numba_tools) test_MultiDimBinning() (in module pisa.core.binning) test_normQuant() (in module pisa.utils.comparisons) test_OneDimBinning() (in module pisa.core.binning) test_Param() (in module pisa.core.param) test_ParamSelector() (in module pisa.core.param) test_ParamSet() (in module pisa.core.param) test_Pipeline() (in module pisa.core.pipeline) test_Prior() (in module pisa.core.prior) test_prob3numba() (in module pisa.stages.osc.prob3numba.numba_osc_tests) test_profile() (in module pisa.utils.profiler) test_recursiveEquality() (in module pisa.utils.comparisons) test_timediff() (in module pisa.utils.format) test_timestamp() (in module pisa.utils.format) test_to_json_from_json() (in module pisa.utils.jsons)

test_VarBinning() (in module pisa.core.binning) test_vbwkde() (in module pisa.utils.vbwkde) tex (pisa.core.binning.OneDimBinning property) (pisa.core.map.Map property) (pisa.core.param.Param property) (pisa.core.param.ParamSet property) (pisa.utils.flavInt.IntType property) (pisa.utils.flavInt.NuFlav property) (pisa.utils.flavInt.NuFlavInt property) (pisa.utils.flavInt.NuFlavIntGroup property) (pisa.utils.spline.Spline property) tex_dollars() (in module pisa.utils.format) tex_join() (in module pisa.utils.format) text2tex() (in module pisa.utils.format) theta12 (pisa.stages.osc.osc_params.OscParams property) theta13 (pisa.stages.osc.osc_params.OscParams property) theta14 (pisa.stages.osc.osc_params.OscParams property) theta23 (pisa.stages.osc.osc_params.OscParams property) timediff() (in module pisa.utils.format) timestamp() (in module pisa.utils.format) to() (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.param.Param method) to_file() (in module pisa.utils.fileio) to_hdf() (in module pisa.utils.hdf) to_json() (in module pisa.utils.jsons) (pisa.core.binning.MultiDimBinning method) (pisa.core.binning.OneDimBinning method) (pisa.core.map.Map method) (pisa.core.map.MapSet method) (pisa.core.param.DerivedParam method) (pisa.core.param.Param method) (pisa.core.param.ParamSet method) (pisa.utils.callable.Funct method) (pisa.utils.callable.OPS method) (pisa.utils.callable.Var method) to_pickle() (in module pisa.utils.fileio) TOKENS (pisa.utils.flavInt.NuFlavInt attribute) (pisa.utils.flavInt.NuFlavIntGroup attribute) TOMOGRAPHY_ERROR_MSG (in module pisa.stages.osc.scaling_params) tomography_type (pisa.stages.osc.prob3.prob3 attribute) tot_num_bins (pisa.core.binning.MultiDimBinning property) toy_event_generator (class in pisa.stages.data.toy_event_generator) TRACE (pisa.utils.log.Levels attribute) transform_groups() (pisa.core.events.Data method) (pisa.utils.flavInt.FlavIntDataGroup method) translate() (pisa.core.container.Container method) translate_source_dict() (pisa.utils.mcSimRunSettings.MCSimRunSettings static method) translatePrior() (pisa.utils.fisher_matrix.FisherMatrix static method) translation_modes (pisa.core.container.Container attribute) TrigOps (class in pisa.utils.callable) two_nu_osc (class in pisa.stages.osc.two_nu_osc) type_error() (in module pisa.core.map)

U

u (pisa.core.param.Param property) uint16 (class in pisa) uint32 (class in pisa) uint64 (class in pisa) uint8 (class in pisa) uintp (in module pisa) ultrasurfaces (class in pisa.stages.discr_sys.ultrasurfaces) unfix() (pisa.core.param.ParamSet method) unique_flavs_tex (pisa.utils.flavInt.NuFlavIntGroup property) units (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property) (pisa.core.param.Param property) UNITS_OPTION (in module pisa.scripts.fit_hypersurfaces) UNITS_SPECIFIER (in module pisa.scripts.fit_hypersurfaces)

units_str (pisa.core.prior.Prior property) unlink() (pisa.core.container.VirtualContainer method) unlink_containers() (pisa.core.container.ContainerSet method) unroll_binning() (pisa.core.container.Container static method) unweighted_histograms (pisa.utils.barlow.Likelihoods attribute) update() (pisa.core.param.ParamSelector method) (pisa.core.param.ParamSet method) (pisa.OrderedDict method) update_existing() (pisa.core.param.ParamSet method) update_hash() (pisa.core.events.Data method) (pisa.core.events.Events method) update_params() (pisa.core.detectors.Detectors method) (pisa.core.distribution_maker.DistributionMaker method) (pisa.core.pipeline.Pipeline method) ureg (in module pisa)

V

v_lri (pisa.stages.osc.lri_params.LRIParams property) VacuumLikeNSIParams (class in pisa.stages.osc.nsi_params) valid_nominal_values() (in module pisa.core.map) validate() (pisa.utils.flavInt.FlavIntData method) (pisa.utils.flavInt.FlavIntDataGroup method) validate_cut_spec() (pisa.utils.data_proc_params.DataProcParams static method) validate_minimizer_settings() (in module pisa.analysis.analysis) validate_params() (pisa.core.stage.Stage method) validate_pid_spec() (pisa.utils.data_proc_params.DataProcParams static method) validate_spline() (pisa.utils.spline.CombinedSpline static method) validate_value() (pisa.core.param.DerivedParam method) (pisa.core.param.Param method)

validate_xsec() (pisa.utils.cross_sections.CrossSections static method) value (pisa.core.param.Param property) values (pisa.core.param.ParamSet property) values() (pisa.OrderedDict method) values_hash (pisa.core.param.ParamSet property) Var (class in pisa.utils.callable) VarBinning (class in pisa.core.binning) vbwkde() (in module pisa.utils.vbwkde) VirtualContainer (class in pisa.core.container) visible_energy_correction() (in module pisa.stages.reco.simple_param)

W

WARN (pisa.utils.log.Levels attribute) weight (class in pisa.stages.aeff.weight) weight_density_to_YeFrac() (pisa.stages.osc.layers.Layers method) weight_density_to_YnFrac() (pisa.stages.osc.layers.Layers method)

weight_hnl (class in pisa.stages.aeff.weight_hnl) weighted_bin_volumes() (pisa.core.binning.MultiDimBinning method) weighted_bin_widths (pisa.core.binning.OneDimBinning property) weighted_centers (pisa.core.binning.MultiDimBinning property) (pisa.core.binning.OneDimBinning property)

X

xlateGroupsStr() (in module pisa.utils.flavInt)

Z

zeros() (pisa.core.binning.MultiDimBinning method)